All Research Designs
6mRNA VaccinesComputational vaccine design

Malaria — PvRBP3 mRNA Vaccine Candidate

Research ownership & attribution: Rami M. Alkhaleeli — Alkhaleeli BioAI LLC

Scientific Concept

Plasmodium vivax malaria depends on reticulocyte invasion mediated by parasite proteins such as reticulocyte-binding protein 3 (PvRBP3). This design targets PvRBP3 as the vaccine antigen: immunogenic B-cell and T-cell epitopes are predicted on the PvRBP3 protein, linked into a multi-epitope construct, and encoded in a codon-optimized mRNA of 1,253 nucleotides for conceptual lipid nanoparticle delivery. The aim is broad antigen recognition of a key invasion protein within a Plasmodium vivax vaccine research framework.

Scientific Diagram

Malaria — PvRBP3 mRNA Vaccine Candidate — scientific infographic

Original uploaded scientific infographic — use the Enlarge button for a full-size view.

Design Process

  1. 1

    Target selection — PvRBP3, a key invasion protein of Plasmodium vivax, is chosen as the vaccine target protein.

  2. 2

    Epitope selection — identify immunogenic B-cell and T-cell epitopes on PvRBP3 (12 MHC-I selected, 8 MHC-II selected, plus B-cell epitopes).

  3. 3

    Multi-epitope construct — link selected epitopes with appropriate linker sequences into a multi-epitope PvRBP3 construct.

  4. 4

    Codon optimization & mRNA design — optimize the coding sequence and finalize the mRNA design for high predicted expression (1,253 nt).

  5. 5

    Formulation concept — conceptual mRNA encapsulation in an LNP for delivery.

  6. 6

    Immune activation modeling — model multi-epitope antigen presentation activating CD8+ (cytotoxic) and CD4+ (helper) T cells.

Proposed Biological Mechanism

  1. 1

    The codon-optimized multi-epitope mRNA is delivered (conceptually) in an LNP.

  2. 2

    Host antigen-presenting cells translate the mRNA and present PvRBP3 epitopes.

  3. 3

    CD8+ T cells recognize MHC-I presented epitopes and mount a modeled cytotoxic response.

  4. 4

    CD4+ T cells recognize MHC-II presented epitopes and provide a modeled helper response.

  5. 5

    The predicted outcome is broad antigen recognition of a key malaria invasion protein — potential support for anti-malaria vaccine research, not a proven or approved vaccine.

All steps describe intended, modeled or proposed behavior — no effect above is experimentally proven or clinically demonstrated.

Mathematical Analysis

Target antigen

PvRBP3 · 2,797 aa

Plasmodium vivax reticulocyte-binding protein 3 (GenBank QDH08878.1); VaxiJen antigenicity score 0.755 (probable antigen, threshold > 0.5).

Epitope count

12 MHC-I + 8 MHC-II

Selected from 549 strong MHC-I and 102 strong MHC-II predicted binders (84,356 and 13,915 total predictions).

Estimated global HLA coverage

95.0%

Computational estimate only. The manuscript notes direct coverage of 2 of 8 MHC-I and 4 of 5 MHC-II panel alleles. It is not a measure of vaccine protection.

Final mRNA length

1,253 nt

Complete designed mRNA: 999 nt coding sequence, 333-aa epitope cassette, plus UTRs and a 110-nt poly(A) tail.

Predicted HLA population coverage is a computational prediction of epitope presentation — it is not a measure of actual vaccine protection. All values originate from the supplied manuscript materials.

FASTA Sequence Viewer

FASTA — 1 sequence

Epitope cassette protein sequence (including tPA signal peptide) as printed in the manuscript. The 1,253-nt mRNA is not reproduced here.

> PvRBP3_epitope_cassette_with_signal_peptide

1MDAMKRGLCCVLLLCGAVFVSPKKDVYNKNLTKAAYFLKSGTSIVSAAYHLINRGNNLLA
61AAYFVYTEFYEKAAYELDGVLNNIKAAYSLVTEINKKAAYDMDNIFSILSVAAYSLIGNI
121NAKTAAYNLKTQIKNILDAAYNLGQIKSLKEAAYLMETISSKIAAYDVIHGNVLKIKKGN
181SYAEYEGKMNTLLGPGPGEFGESYKVIETNAAKGPGPGCSSAGFAIIKYKNHEGPGPGIS
241NQKENAEKYVEYIGPGPGLSYVNNNADILYNSNGPGPGVNMKNSVYINTKKYIGPGPGAT
301RESLNSLEPYFTEGPGPGYDKLQVSTGEYTAGK

Length: 333 characters

Original Scientific Manuscript

Read-only viewing

The original manuscript PDF is available below for read-only viewing only. Downloading, copying or redistribution is not permitted without written permission from Alkhaleeli BioAI LLC.

© Alkhaleeli BioAI LLC — Read-only

© Alkhaleeli BioAI LLC. All rights reserved. This manuscript is the intellectual property of Alkhaleeli BioAI LLC and is provided for read-only viewing only. Downloading, copying, printing, redistribution, or any other use — in whole or in part — requires prior written permission from Alkhaleeli BioAI LLC.

Scientific Status

Malaria — Computational vaccine design

These projects are scientific research designs and computational proof-of-concept studies. They are not approved medical products, experimentally validated cures, or guarantees of therapeutic effectiveness.